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Mustafa Jarrar, Muhammad Abdul-Mageed, Mohammed Khalilia, Bashar Talafha, AbdelRahim Elmadany, Nagham Hamad, Alaa' Omar (2023). WojoodNER 2023: The First Arabic Named Entity Recognition Shared Task. Proceedings of The First Arabic Natural Language Processing Conference (ArabicNLP 2023, co-hosted with EMNLP 2023).

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Mustafa Jarrar, Sanad Malaysha, Tymaa Hammouda, Mohammed Khalilia (2023). SALMA: Arabic Sense-Annotated Corpus and WSD Benchmarks. Proceedings of The First Arabic Natural Language Processing Conference (ArabicNLP 2023, co-hosted with EMNLP 2023).

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Mustafa Jarrar, Ahmet Birim, Mohammed Khalilia, Mustafa Erden, Sana Ghanem (2023). ArBanking77: Intent Detection Neural Model and a New Dataset in Modern and Dialectical Arabic. Proceedings of The First Arabic Natural Language Processing Conference (ArabicNLP 2023, co-hosted with EMNLP 2023).

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Haneen Liqreina, Mustafa Jarrar, Mohammed Khalilia, Ahmed El-Shangiti, Muhammad Abdul-Mageed (2023). Arabic Fine-Grained Entity Recognition. Proceedings of The First Arabic Natural Language Processing Conference (ArabicNLP 2023, co-hosted with EMNLP 2023).

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Nagham Hamad, Mustafa Jarrar, Mohammed Khalilia, Nadim Nashif (2023). Offensive Hebrew Corpus and Detection using BERT. The ACS/IEEE International Conference on Computer Systems and Applications.

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Sanad Malaysha, Mustafa Jarrar, Mohammed Khalilia (2023). Context-Gloss Augmentation for Improving Arabic Target Sense Verification. The 12th International Global Wordnet Conference (GWC2023), Global Wordnet Association. (pp. ). San Sebastian, Spain, 2023.

Thiruvarul Selvan Senthivel, Varun Sembium Varadarajan, Borui Zhang, Tiberiu Mircea Doman, Parminder Bhatia- Arun Kumar Ravi, Mohammed Khalilia, Emine Busra Celikkaya (2022). Service architecture for entity and relationship detection in unstructured text. United States Patent.

Mohammed Khalilia, Pragyana Mishra (2022). Facial Feature Location-based Audio Frame Replacement. United States Patent.

Gregory Johnson, Pragyana Mishra, Mohammed Khalilia, Wenbin Ouyang, Naveen Nair (2022). Video Frame Replacement Based on Auxiliary Data. United States Patent.

Mustafa Jarrar, Mohammed Khalilia, Sana Ghanem (2022). Wojood: Nested Arabic Named Entity Corpus and Recognition using BERT. Proceedings of the International Conference on Language Resources and Evaluation (LREC).

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Parminder Bhatia, Busra Celikkaya, Mohammed Khalilia (2019). Joint Entity Extraction and Assertion Detection for Clinical Text. Proceedings of the 57th Annual Meeting of the Association for Computational Linguistics (ACL).

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Parminder Bhatia, Busra Celikkaya, Mohammed Khalilia, Selvan Senthivel (2019). Comprehend Medical: A Named Entity Recognition and Relationship Extraction Web Service. 18th IEEE International Conference On Machine Learning And Applications (ICMLA).

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Mengqi Jin, Mohammad Taha Bahadori, Aaron Colak, Parminder Bhatia, Busra Celikkaya, Ram Bhakta, Selvan Senthivel, Mohammed Khalilia, Daniel Navarro, Borui Zhang, Tiberiu Doman, Arun Ravi, Matthieu Liger, Taha Kass-hout (2018). Improving Hospital Mortality Prediction with Medical Named Entities and Multimodal Learning. Machine Learning for Health (ML4H) Workshop at NeurIPS.

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David A Gutman, Mohammed Khalilia, Sanghoon Lee, Michael Nalisnik, Zach Mullen, Jonathan Beezley, Deepak R Chittajallu, David Manthey, Lee A D Cooper (2017). The Digital Slide Archive: A Software Platform for Management, Integration, and Analysis of Histology for Cancer Research. Cancer Research.

Lincoln Sheets, Lori Popejoy, Mohammed Khalilia, Greg Petroski, Jerry C. Parker (2016). Identifying Patients at Risk of High Healthcare Utilization. AMIA Annual Symposium Proceedings.

Lori L. Popejoy, Frank Stetzer, Lanis Hicks, Marilyn J. Rantz, Colleen Galambos, Mihail Popescu, Mohammed A. Khalilia, Karen D. Marek (2015). Comparing Aging in Place to Home Health Care: Impact of Nurse Care Coordination On Utilization and Costs. Nursing Economics.

Robert Chen, Hang Su, Mohammed Khalilia, Sizhe Lin, Yue Peng, Tod Davis, Daniel A Hirsh, Elizabeth Searles, Javier Tejedor-Sojo, Michael Thompson, Jimeng Sun (2015). Cloud-based Predictive Modeling System and its Application to Asthma Readmission Prediction. AMIA Annual Symposium Proceedings.

Mohammed Khalilia, Myung Choi, Amelia Henderson, Sneha Iyengar, Mark Braunstein, Jimeng Sun (2015). Clinical predictive modeling development and deployment through FHIR web services. AMIA Annual Symposium Proceedings.

Mohammed Khalilia, Mihail Popescu (2014). Topology Preservation in Fuzzy Self-Organizing Maps. Advance Trends in Soft Computing.

Mohammed Khalilia, Mihail Popescu (2014). Relational Fuzzy Self-Organizing Maps for Cluster Visualization and Summarization. International Journal of Uncertainty, Fuzziness and Knowledge-Based Systems.

Lori L Popejoy, Mohammed A Khalilia, Mihail Popescu, Colleen Galambos, Vanessa Lyons, Marilyn Rantz, Lanis Hicks, Frank Stetzer (2014). Quantifying care coordination using natural language processing and domain-specific ontology. Journal of the American Medical Informatics Association.

Mohammed Khalilia, James Bezdek, Mihail Popescu, James Keller (2014). Improvements to the relational fuzzy c-means clustering algorithm. Pattern Recognition.

Mohammed Khalilia, Mihail Popescu (2012). Fuzzy relational self-organizing maps. IEEE International Conference on Fuzzy Systems.

Mihail Popescu, Mohammed Khalilia (2011). Improving disease prediction using ICD-9 ontological features. IEEE International Conference on Fuzzy Systems.